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  5. Cre12.g528900

Cre12.g528900 (30793507)


Aliases : 30793507

No description available


Gene families : OG_01_0003489 (OrthoFinder) Phylogenetic Tree(s): OG0003489_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g528900
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020684.42 tig00020684_g12890.t1 No description available 0.05 OrthoFinder
Cz05g20130.t1 No alias UPF0113, pre-PUA domain; UPF0113, PUA domain [Interproscan]. 0.04 OrthoFinder
Dusal.2007s00002.1 33197505 UPF0113, PUA domain; UPF0113, pre-PUA domain [Interproscan]. 0.04 OrthoFinder
EOD24610 No alias UPF0113, pre-PUA domain; UPF0113, PUA domain [Interproscan]. 0.09 OrthoFinder
OT_05G04260.1 No alias UPF0113, PUA domain; UPF0113, pre-PUA domain [Interproscan]. 0.03 OrthoFinder
PTI_11G02170.1 No alias UPF0113, PUA domain; UPF0113, pre-PUA domain [Interproscan]. 0.04 OrthoFinder
Sro196_g083640.1 Contig3206.g25360 Protein NIP7 homolog 0.06 OrthoFinder
TP01G02280.1 No alias UPF0113, PUA domain; UPF0113, pre-PUA domain [Interproscan]. 0.04 OrthoFinder
Vocar.0037s0032.1 32897642 UPF0113, PUA domain; UPF0113, pre-PUA domain [Interproscan]. 0.02 OrthoFinder
XM_002502126.1 MICPUN_81410, 81410 PUA like RNA binding protein 0.05 OrthoFinder
XM_003057314.1 MicpuC2_32422, 32422 UPF0113, PUA domain; UPF0113, pre-PUA domain [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01001473.1_cds_GFH19501.1_13978 HaLaN_16456, GFH19501 60S ribosome subunit biogenesis protein NIP7 homolog 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005155 UPF0113_PUA 96 174
IPR040598 UPF0113_N 2 83
No external refs found!