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  5. Cre12.g525200

Cre12.g525200 (30792563, NOP56)


Aliases : 30792563, NOP56

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component


Gene families : OG_01_0003488 (OrthoFinder) Phylogenetic Tree(s): OG0003488_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g525200
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001073.20 tig00001073_g6828.t1 RNA processing.RNA modification.rRNA/tRNA... 0.09 OrthoFinder
Cz05g21140.t1 No alias NOP5, N-terminal; Nop domain [Interproscan]. 0.21 OrthoFinder
Dusal.0189s00007.1 33201868 NOP5, N-terminal; Nop domain [Interproscan]. 0.09 OrthoFinder
EOD27783 No alias Nop domain; NOP5, N-terminal [Interproscan]. 0.08 OrthoFinder
OT_08G00480.1 No alias NOP5, N-terminal; Nop domain [Interproscan]. 0.09 OrthoFinder
PTI_03G02870.1 No alias NOP5, N-terminal; Nop domain [Interproscan]. 0.17 OrthoFinder
Sro827_g207860.1 Contig2896.g23091 Nucleolar protein 58 0.03 OrthoFinder
TP01G09720.1 No alias NOP5, N-terminal; Nop domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55629 55629 NOP5, N-terminal; Nop domain [Interproscan]. 0.08 OrthoFinder
Vocar.0037s0021.1 32897603 Nop domain; NOP5, N-terminal [Interproscan]. 0.07 OrthoFinder
XM_002502937.1 MICPUN_59549, 59549 NOP5, N-terminal; Nop domain [Interproscan]. 0.1 OrthoFinder
XM_003058716.1 MicpuC2_33398, 33398 NOP5, N-terminal; Nop domain [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000053.1_cds_GFH06734.1_1211 HaLaN_01415, GFH06734 Nucleolar protein, component of C/D snoRNPs 0.04 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20780.1_5037 PRW20780 Nucleolar 56 0.16 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002687 Nop_dom 176 408
IPR012974 NOP5_N 4 68
No external refs found!