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  5. Cpa|evm.model.tig00000441.12

Cpa|evm.model.tig00000441.12 (tig00000441_g705.t1)


Aliases : tig00000441_g705.t1

Description : DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana


Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000441.12
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.11 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.05 OrthoFinder
Cre03.g156150 30787649 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre07.g314900 30775364 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 OrthoFinder
Cz01g13050.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.01 OrthoFinder
EOD29706 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
OT_10G00320.1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
PTI_11G00580.1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
PTI_14G03510.1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
Sro1516_g279100.1 Contig3898.g29880 RNA helicase HAS1 0.01 OrthoFinder
Sro625_g177670.1 Contig691.g8105 RNA helicase DBP4 0.01 OrthoFinder
TP03G05140.1 No alias Domain of unknown function DUF4217; Helicase,... 0.01 OrthoFinder
XM_003063698.1 MicpuC2_22865, 22865 Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
lcl|BLLF01000456.1_cds_GFH11993.1_6470 HaLaN_07604, GFH11993 RNA helicase 0.02 OrthoFinder
lcl|BLLF01002892.1_cds_GFH25696.1_20173 HaLaN_23701, GFH25696 RNA helicase 0.01 OrthoFinder
lcl|BLLF01003854.1_cds_GFH28385.1_22862 HaLaN_26865, GFH28385 RNA helicase 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33079.1_3833 PRW33079 DEAD-box ATP-dependent RNA helicase 32 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Enrichment
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 220 319
No external refs found!