Cre12.g515850 (30793407, PCN1)

Aliases : 30793407, PCN1

Description : Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp protein

Gene families : OG_01_0001486 (OrthoFinder) Phylogenetic Tree(s): OG0001486_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g515850
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020553.141	tig00020553_g10631.t1	Cell cycle.interphase.DNA...	0.06	OrthoFinder
Cpa\|evm.model.tig00021319.67	tig00021319_g20259.t1	Cell cycle.interphase.DNA...	0.04	OrthoFinder
Cz03g35210.t1	No alias	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.07	OrthoFinder
Dusal.0073s00022.1	33194576	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.08	OrthoFinder
EOD29149	No alias	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.02	OrthoFinder
OT_06G02920.1	No alias	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.03	OrthoFinder
Sro57_g033090.1	Contig284.g3677	Proliferating cell nuclear antigen	0.05	OrthoFinder
TP03G00410.1	No alias	Proliferating cell nuclear antigen, PCNA, N-terminal;...	0.07	OrthoFinder
Vocar.0006s0321.1	32893962	Proliferating cell nuclear antigen, PCNA, N-terminal;...	0.06	OrthoFinder
XM_002500833.1	MICPUN_93665, 93665	Proliferating cell nuclear antigen, PCNA, N-terminal;...	0.04	OrthoFinder
XM_003059418.1	MicpuC2_33859, 33859	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.06	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499918.1_8871	KAA8499918	Proliferating cell nuclear antigen	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006275	regulation of DNA replication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
CC	GO:0005815	microtubule organizing center	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006401	RNA catabolic process	IEP	Enrichment
BP	GO:0007062	sister chromatid cohesion	IEP	Enrichment
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Enrichment
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Enrichment
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
BP	GO:0019439	aromatic compound catabolic process	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Enrichment
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Enrichment
BP	GO:0046700	heterocycle catabolic process	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Enrichment
BP	GO:1903047	mitotic cell cycle process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR022648	Pr_cel_nuc_antig_N	1	123
IPR022649	Pr_cel_nuc_antig_C	127	254

External Links

No external refs found!

Cre12.g515850 (30793407, PCN1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation