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Aliases : 30792329, RPS28
Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS28 component
Gene families : OG_01_0003823 (OrthoFinder) Phylogenetic Tree(s): OG0003823_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre12.g510450 | |
| Cluster | HCCA: Cluster_32 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000194.27 | tig00000194_g14753.t1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.06 | OrthoFinder | |
| Cz13g13220.t1 | No alias | Ribosomal protein S28e [Interproscan]. | 0.1 | OrthoFinder | |
| EOD20419 | No alias | Ribosomal protein S28e [Interproscan]. | 0.17 | OrthoFinder | |
| EOD23634 | No alias | Ribosomal protein S28e [Interproscan]. | 0.17 | OrthoFinder | |
| OT_07G03760.1 | No alias | Ribosomal protein S28e [Interproscan]. | 0.07 | OrthoFinder | |
| PTI_26G01600.1 | No alias | Ribosomal protein S28e [Interproscan]. | 0.14 | OrthoFinder | |
| Sro2078_g313630.1 | Contig3499.g27144 | 40S ribosomal protein S28 | 0.51 | OrthoFinder | |
| TP24G00120.1 | No alias | Ribosomal protein S28e [Interproscan]. | 0.07 | OrthoFinder | |
| Vocar.0016s0208.1 | 32898111 | Ribosomal protein S28e [Interproscan]. | 0.09 | OrthoFinder | |
| XM_002507628.1 | MICPUN_51733, 51733 | Hypothetical protein (RPS28E) | 0.03 | OrthoFinder | |
| XM_003056404.1 | MicpuC2_64637, 64637 | Ribosomal protein S28e (RPS28E) | 0.03 | OrthoFinder | |
| lcl|VRMN01000010.1_cds_KAA8492075.1_5258 | KAA8492075 | 40S ribosomal protein S28 | 0.06 | OrthoFinder | |
| lcl|VRMN01000023.1_cds_KAA8490545.1_5911 | KAA8490545 | 40S ribosomal protein S28 | 0.23 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000289 | Ribosomal_S28e | 1 | 54 |
| No external refs found! |