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  5. Cre12.g508150

Cre12.g508150 (30793288)


Aliases : 30793288

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Iswi chromatin remodeling factor


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g508150
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000128.11 tig00000128_g7211.t1 ISWI chromatin-remodeling complex ATPase CHR17... 0.02 OrthoFinder
Cpa|evm.model.tig00000217.25 tig00000217_g19158.t1 Chromatin structure-remodeling complex protein SYD... 0.04 OrthoFinder
Cpa|evm.model.tig00020960.24 tig00020960_g16545.t1 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021623.13 tig00021623_g23013.t1 RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder
Cz02g31160.t1 No alias Helicase, C-terminal; SLIDE domain; SNF2-related,... 0.02 OrthoFinder
Cz16g07220.t1 No alias Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
Cz19g07040.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.04 OrthoFinder
Dusal.0024s00040.1 33202173 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
Dusal.0047s00031.1 33194295 Helicase, C-terminal; SLIDE domain; ISWI, HAND domain;... 0.04 OrthoFinder
Dusal.0357s00004.1 33189829 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.04 OrthoFinder
Dusal.0752s00002.1 33199466 Domain of unknown function DUF3535; SNF2-related,... 0.02 OrthoFinder
Dusal.0752s00003.1 33199467 HEAT-like repeat [Interproscan]. 0.02 OrthoFinder
Dusal.1946s00001.1 33193641 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD05386 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.04 OrthoFinder
EOD18155 No alias High mobility group box domain; ISWI, HAND domain;... 0.04 OrthoFinder
EOD23118 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD25651 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
EOD26256 No alias ISWI, HAND domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
EOD26260 No alias SNF2-related, N-terminal domain; ISWI, HAND domain;... 0.03 OrthoFinder
EOD34138 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.01 OrthoFinder
EOD34139 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD36957 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
OT_06G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
OT_07G04020.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
OT_07G04400.1 No alias Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... 0.04 OrthoFinder
OT_11G00460.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
PTI_02G06230.1 No alias Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... 0.01 OrthoFinder
PTI_04G04910.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_12G00850.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.01 OrthoFinder
PTI_12G03630.1 No alias SLIDE domain; Helicase, C-terminal; SNF2-related,... 0.03 OrthoFinder
Sro125_g060200.1 Contig2833.g22731 Chromodomain-helicase-DNA-binding protein 0.02 OrthoFinder
Sro358_g125960.1 Contig1210.g11383 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Sro847_g210300.1 Contig4605.g34375 CHD3-type chromatin-remodeling factor 0.02 OrthoFinder
TP07G00550.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Transcript_contig_54441 54441 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Transcript_contig_67500 67500 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
Vocar.0011s0087.1 32895477 Domain of unknown function DUF3535; Helicase,... 0.02 OrthoFinder
Vocar.0016s0256.1 32897896 SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... 0.04 OrthoFinder
XM_002502289.1 MICPUN_58978, 58978 SNF2 super family 0.02 OrthoFinder
XM_002503125.1 MICPUN_91017, 91017 SNF2 super family 0.04 OrthoFinder
XM_002504726.1 MICPUN_62221, 62221 SNF2 super family 0.04 OrthoFinder
XM_003058971.1 MicpuC2_58412, 58412 SNF2 super family 0.02 OrthoFinder
XM_003061140.1 MicpuC2_28265, 28265 SNF2 super family 0.02 OrthoFinder
XM_003061952.1 MicpuC2_51787, 51787 SNF2 super family 0.02 OrthoFinder
XM_003064054.1 MicpuC2_54122, 54122 SNF2 super family 0.04 OrthoFinder
lcl|BLLF01000001.1_cds_GFH05549.1_26 HaLaN_00029, GFH05549 Helicase, C-terminal; SLIDE domain; ISWI, HAND domain... 0.02 OrthoFinder
lcl|BLLF01000001.1_cds_GFH05550.1_27 HaLaN_00030, GFH05550 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13582.1_8059 HaLaN_09500, GFH13582 Helicase, C-terminal [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001714.1_cds_GFH20870.1_15347 HaLaN_18069, GFH20870 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60614.1_4411 PRW60614 ATP-dependent helicase BRM 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58677.1_7830 PRW58677 Chromatin structure-remodeling complex SYD-like isoform X1 0.05 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56604.1_9911 PRW56604 CHROMATIN REMODELING 19 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56740.1_9705 PRW56740 Chromatin-remodeling complex ATPase chain 0.05 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18335.1_5824 PRW18335 TATA-binding-associated factor 172 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 KAA8498955 SWI/SNF chromatin-remodeling complex subunit snf22 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
CC GO:0000124 SAGA complex IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003713 transcription coactivator activity IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004819 glutamine-tRNA ligase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005856 cytoskeleton IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR015194 ISWI_HAND-dom 747 845
IPR001650 Helicase_C 480 592
IPR000330 SNF2_N 187 457
IPR015195 SLIDE 902 1012
No external refs found!