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  5. Cre12.g505200

Cre12.g505200 (30792990)


Aliases : 30792990

Description : DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica


Gene families : OG_01_0001221 (OrthoFinder) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g505200
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.20 tig00020848_g14547.t1 DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.1 OrthoFinder
Cpa|evm.model.tig00021122.18 tig00021122_g18449.t1 DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre16.g683500 30777863 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cz02g41230.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Cz05g24070.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD20644 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
OT_12G00590.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.13 OrthoFinder
PTI_14G02610.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.09 OrthoFinder
Sro82_g043770.1 Contig4032.g30968 Dependent RNA helicase 0.11 OrthoFinder
Transcript_contig_56905 56905 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Vocar.0016s0296.1 32898205 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.06 OrthoFinder
XM_002503117.1 MICPUN_83132, 83132 Dead-box ATP-dependent RNA helicase 0.08 OrthoFinder
XM_003061132.1 MicpuC2_44623, 44623 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
lcl|BLLF01001969.1_cds_GFH22098.1_16575 HaLaN_19509, GFH22098 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56671.1_9850 PRW56671 DEAD-box ATP-dependent RNA helicase 10 0.09 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56033.1_10175 PRW56033 RNA helicase 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008252 nucleotidase activity IEP Enrichment
MF GO:0008253 5'-nucleotidase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 248 351
IPR011545 DEAD/DEAH_box_helicase_dom 42 208
No external refs found!