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  5. Cre12.g493950

Cre12.g493950 (30792612, PRPS13)


Aliases : 30792612, PRPS13

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS13 | mtRPS13 component


Gene families : OG_01_0000909 (OrthoFinder) Phylogenetic Tree(s): OG0000909_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g493950
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Cre06.g288400 30779477, MRPS11 30S ribosomal protein S11, chloroplastic OS=Chlorella vulgaris 0.04 OrthoFinder
Cz02g19040.t1 No alias Ribosomal protein S13 [Interproscan]. 0.23 OrthoFinder
Dusal.1916s00001.1 33187808 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
EOD30026 No alias Ribosomal protein S11 [Interproscan]. 0.03 OrthoFinder
OT_03G05840.1 No alias Ribosomal protein S13 [Interproscan]. 0.26 OrthoFinder
Sro51_chlor_g029670.1 Rps13 Rps13 0.09 OrthoFinder
Sro51_chlor_g029680.1 Rps11 Rps11 0.09 OrthoFinder
Sro884_mit_g215880.1 Rps13 Rps13 0.09 OrthoFinder
TPCG02670.1 No alias Ribosomal protein S11 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57743 57743 Ribosomal protein S13 [Interproscan]. 0.03 OrthoFinder
Vocar.0031s0017.1 32890165 Ribosomal protein S13 [Interproscan]. 0.06 OrthoFinder
XM_002506993.1 MICPUN_89270, 89270 Ribosomal protein S13, chloroplast precursor (RPS13) 0.19 OrthoFinder
XM_003054733.1 MicpuC2_45129, 45129 Ribosomal protein S13, chloroplast precursor (RPS13) 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034311 diol metabolic process IEP Enrichment
BP GO:0034312 diol biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 44 148
No external refs found!