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  5. Cre12.g492450

Cre12.g492450 (30792289)


Aliases : 30792289

Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g492450
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000786.1 tig00000786_g4048.t1 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00021094.26 tig00021094_g18111.t1 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz05g07080.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
EOD19502 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_03G04780.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.03 OrthoFinder
OT_06G02830.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.03 OrthoFinder
OT_18G01660.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Sro335_g119970.1 Contig3868.g29754 DExH-box ATP-dependent RNA helicase DExH1 0.02 OrthoFinder
Sro947_g223440.1 Contig4683.g34828 Putative ATP-dependent RNA helicase DHX30 0.03 OrthoFinder
SymbC1.scaffold6405.4 6405.4 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55857 55857 Helicase, C-terminal; R3H domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
XM_002500677.1 MICPUN_65643, 65643 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
XM_002507013.1 MICPUN_77912, 77912 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_003056713.1 MicpuC2_697, 697 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003060901.1 MicpuC2_197, 197 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003064367.1 MicpuC2_43509, 43509 Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1295 1386
IPR001650 Helicase_C 1078 1202
IPR011709 DUF1605 1482 1580
No external refs found!