Cre12.g490150 (30793094)

Aliases : 30793094

Description : ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana

Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g490150
Cluster	HCCA: Cluster_127

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000789.41	tig00000789_g4134.t1	ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana	0.06	OrthoFinder
Cpa\|evm.model.tig00020961.28	tig00020961_g16648.t1	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cz01g16070.t1	No alias	DEAD/DEAH box helicase domain [Interproscan].	0.02	OrthoFinder
Cz01g28020.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.02	OrthoFinder
Cz02g03170.t1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain;...	0.11	OrthoFinder
Cz02g33110.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.02	OrthoFinder
Cz10g20100.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.05	OrthoFinder
Cz12g21050.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.05	OrthoFinder
Dusal.0020s00028.1	33193689	Helicase, C-terminal; RQC domain; ATP-dependent DNA...	0.02	OrthoFinder
EOD12459	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
EOD36303	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
OT_03G01700.1	No alias	Helicase, C-terminal; RQC domain; ATP-dependent DNA...	0.05	OrthoFinder
OT_04G00490.1	No alias	DEAD/DEAH box helicase domain; HRDC domain; Helicase,...	0.11	OrthoFinder
OT_05G00620.1	No alias	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.01	OrthoFinder
OT_05G04280.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.04	OrthoFinder
PTI_01G08380.1	No alias	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.01	OrthoFinder
PTI_02G04790.1	No alias	Zinc finger, GRF-type; Helicase, C-terminal;...	0.02	OrthoFinder
PTI_13G02100.1	No alias	Zinc finger, GRF-type; Helicase, C-terminal; DEAD/DEAH...	0.02	OrthoFinder
Sro108_g054090.1	Contig2294.g18989	Syndrome ATP-dependent helicase homolog	0.05	OrthoFinder
Sro408_g136820.1	Contig3193.g25217	Probable Werner syndrome ATP-dependent helicase homolog 1	0.02	OrthoFinder
Sro83_g044440.1	Contig4450.g33418	Syndrome ATP-dependent helicase homolog	0.03	OrthoFinder
Sro9_g007280.1	Contig4120.g31496	Probable Werner syndrome ATP-dependent helicase homolog 1	0.03	OrthoFinder
Transcript_contig_57457	57457	Zinc finger, CCHC-type; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
Vocar.0048s0026.1	32893654	Zinc finger, CCHC-type; DEAD/DEAH box helicase domain...	0.07	OrthoFinder
XM_002499883.1	MICPUN_79105, 79105	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.02	OrthoFinder
XM_002502498.1	MICPUN_50295, 50295	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.07	OrthoFinder
XM_003055181.1	MicpuC2_12297, 12297	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.04	OrthoFinder
XM_003056852.1	MicpuC2_636, 636	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder
XM_003062439.1	MicpuC2_29315, 29315	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.02	OrthoFinder
XM_003062797.1	MicpuC2_52663, 52663	ATP-dependent DNA helicase	0.02	OrthoFinder
lcl\|BLLF01001097.1_cds_GFH17107.1_11584	HaLaN_13664, GFH17107	DEAD/DEAH box helicase domain [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Enrichment
CC	GO:0000808	origin recognition complex	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0004376	glycolipid mannosyltransferase activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006497	protein lipidation	IEP	Enrichment
BP	GO:0006505	GPI anchor metabolic process	IEP	Enrichment
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Enrichment
BP	GO:0006643	membrane lipid metabolic process	IEP	Enrichment
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Enrichment
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Enrichment
BP	GO:0006664	glycolipid metabolic process	IEP	Enrichment
BP	GO:0007062	sister chromatid cohesion	IEP	Enrichment
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
BP	GO:0009247	glycolipid biosynthetic process	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
MF	GO:0034061	DNA polymerase activity	IEP	Enrichment
MF	GO:0043015	gamma-tubulin binding	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Enrichment
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Enrichment
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Enrichment
BP	GO:0046486	glycerolipid metabolic process	IEP	Enrichment
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Enrichment
MF	GO:0051751	alpha-1,4-mannosyltransferase activity	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment
BP	GO:1903047	mitotic cell cycle process	IEP	Enrichment
BP	GO:1903509	liposaccharide metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	57	214
IPR002121	HRDC_dom	603	668
IPR018982	RQC_domain	454	562
IPR032284	RecQ_Zn-bd	379	444
IPR001650	Helicase_C	271	366

External Links

No external refs found!

Cre12.g490150 (30793094)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation