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  5. Cre11.g467578

Cre11.g467578 (30775702)


Aliases : 30775702

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL28 component


Gene families : OG_01_0004517 (OrthoFinder) Phylogenetic Tree(s): OG0004517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre11.g467578
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020710.93 tig00020710_g13357.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder
Cz16g20220.t1 No alias Ribosomal L28e/Mak16 [Interproscan]. 0.36 OrthoFinder
Dusal.0187s00004.1 33194139 Ribosomal L28e/Mak16 [Interproscan]. 0.15 OrthoFinder
EOD16362 No alias Ribosomal L28e/Mak16 [Interproscan]. 0.22 OrthoFinder
PTI_03G02910.1 No alias Ribosomal L28e/Mak16 [Interproscan]. 0.41 OrthoFinder
Sro827_g207890.1 Contig2896.g23094 60S ribosomal protein L28 0.44 OrthoFinder
SymbC1.scaffold11278.1 11278.1 Ribosomal L28e/Mak16 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold3066.8 3066.8 Ribosomal L28e/Mak16 [Interproscan]. 0.1 OrthoFinder
TP01G10070.1 No alias Ribosomal L28e/Mak16 [Interproscan]. 0.48 OrthoFinder
Transcript_contig_79258 79258 Ribosomal L28e/Mak16 [Interproscan]. 0.04 OrthoFinder
Vocar.0014s0223.1 32888380 Ribosomal L28e/Mak16 [Interproscan]. 0.25 OrthoFinder
XM_002509130.1 MICPUN_52633, 52633 Ribosomal L28e/Mak16 [Interproscan]. 0.26 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491874.1_4882 KAA8491874 60S ribosomal protein L28 0.29 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 5 117
No external refs found!