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  5. Cre10.g462700

Cre10.g462700 (30790341)


Aliases : 30790341

Description : RNA processing.RNA 3-end polyadenylation.Cleavage Factor I (CF-Im) complex.CPFS5/CFIm25 component


Gene families : OG_01_0006391 (OrthoFinder) Phylogenetic Tree(s): OG0006391_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g462700
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Vocar.0029s0016.1 32887283 Cleavage/polyadenylation specificity factor subunit 5... 0.02 OrthoFinder
XM_002508258.1 MICPUN_97791, 97791 Cleavage/polyadenylation specificity factor subunit 5... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499358.1_8311 KAA8499358 Pre-mRNA cleavage factor Im 25 kDa subunit 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
CC GO:0005849 mRNA cleavage factor complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Enrichment
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR016706 Cleav_polyA_spec_factor_su5 9 194
No external refs found!