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  5. Cre10.g459600

Cre10.g459600 (30790609)


Aliases : 30790609

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.SWA2/NOC1 assembly factor


Gene families : OG_01_0002091 (OrthoFinder) Phylogenetic Tree(s): OG0002091_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g459600
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021293.22 tig00021293_g20014.t1 No description available 0.1 OrthoFinder
Cpa|evm.model.tig00021293.23 tig00021293_g20014.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cz08g12220.t1 No alias Hypothetical protein 0.17 OrthoFinder
Cz08g12230.t1 No alias Hypothetical protein 0.22 OrthoFinder
Cz08g12240.t1 No alias CCAAT-binding factor [Interproscan]. 0.23 OrthoFinder
Dusal.0293s00003.1 33190184 CCAAT-binding factor [Interproscan]. 0.08 OrthoFinder
EOD11177 No alias CCAAT-binding factor [Interproscan]. 0.18 OrthoFinder
EOD19601 No alias CCAAT-binding factor [Interproscan]. 0.08 OrthoFinder
OT_14G00120.1 No alias CCAAT-binding factor [Interproscan]. 0.13 OrthoFinder
PTI_33G00080.1 No alias CCAAT-binding factor [Interproscan]. 0.23 OrthoFinder
Sro381_g130900.1 Contig161.g1823 CCAAT/enhancer-binding protein zeta 0.21 OrthoFinder
TP01G09110.1 No alias CCAAT-binding factor [Interproscan]. 0.1 OrthoFinder
Transcript_contig_78321 78321 CCAAT-binding factor [Interproscan]. 0.1 OrthoFinder
Vocar.0020s0188.1 32886771 CCAAT-binding factor [Interproscan]. 0.07 OrthoFinder
XM_003063700.1 MicpuC2_49035, 49035 CCAAT-binding factor [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01000229.1_cds_GFH09368.1_3845 HaLaN_04490, GFH09368 CBF domain-containing protein 0.16 OrthoFinder
lcl|BLLF01000932.1_cds_GFH16006.1_10483 HaLaN_12349, GFH16006 CBF domain-containing protein 0.06 OrthoFinder
lcl|BLLF01002098.1_cds_GFH22680.1_17157 HaLaN_20185, GFH22680 CBF domain-containing protein 0.05 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32482.1_3998 PRW32482 CCAAT enhancer-binding zeta 0.19 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491020.1_9777 KAA8491020 Ribosome biogenesis protein NOC1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 607 850
No external refs found!