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  5. Cre10.g455300

Cre10.g455300 (30789915)


Aliases : 30789915

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D3 component


Gene families : OG_01_0000904 (OrthoFinder) Phylogenetic Tree(s): OG0000904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g455300
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000480.60 tig00000480_g1327.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.06 OrthoFinder
Cpa|evm.model.tig00020912.17 tig00020912_g15787.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder
Dusal.0086s00033.1 33192754 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Dusal.0437s00010.1 33198266 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD07983 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
OT_06G01480.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro479_g151180.1 Contig1858.g16253 Ribonucleoprotein Sm D3 0.01 OrthoFinder
SymbC1.scaffold3926.5 3926.5 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
TP13G00410.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
Transcript_contig_59145 59145 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
XM_002507873.1 MICPUN_84175, 84175 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
XM_003056196.1 MicpuC2_31243, 31243 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59229.1_7217 PRW59229 Small nuclear ribonucleo Sm D3 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57070.1_9277 PRW57070 Putative U6 snRNA-associated Sm LSm4 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 14 77
No external refs found!