Cre10.g453450 (30789823)

Aliases : 30789823

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D2 component

Gene families : OG_01_0003096 (OrthoFinder) Phylogenetic Tree(s): OG0003096_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Cre10.g453450
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021133.4 tig00021133_g18904.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.12 OrthoFinder
Cz19g03170.t1 No alias Hypothetical protein 0.02 OrthoFinder
Dusal.0237s00013.1 33197982 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder
TP14G02510.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Transcript_contig_59682 59682 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
Vocar.0030s0107.1 32894543 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01003880.1_cds_GFH28442.1_22919 HaLaN_26933, GFH28442 SnRNP core protein D2 0.03 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50785.1_930 PRW50785 Small nuclear ribonucleo Sm D2 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 34 105
No external refs found!