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Aliases : 30789823
Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D2 component
Gene families : OG_01_0003096 (OrthoFinder) Phylogenetic Tree(s): OG0003096_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre10.g453450 | |
| Cluster | HCCA: Cluster_70 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00021133.4 | tig00021133_g18904.t1 | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.12 | OrthoFinder | |
| Cz19g03170.t1 | No alias | Hypothetical protein | 0.02 | OrthoFinder | |
| Dusal.0237s00013.1 | 33197982 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.04 | OrthoFinder | |
| TP14G02510.1 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.03 | OrthoFinder | |
| Transcript_contig_59682 | 59682 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0030s0107.1 | 32894543 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.08 | OrthoFinder | |
| lcl|BLLF01003880.1_cds_GFH28442.1_22919 | HaLaN_26933, GFH28442 | SnRNP core protein D2 | 0.03 | OrthoFinder | |
| lcl|LHPG02000010.1_cds_PRW50785.1_930 | PRW50785 | Small nuclear ribonucleo Sm D2 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003743 | translation initiation factor activity | IEP | Enrichment |
| BP | GO:0006405 | RNA export from nucleus | IEP | Enrichment |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Enrichment |
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| CC | GO:0008541 | proteasome regulatory particle, lid subcomplex | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Enrichment |
| CC | GO:0016272 | prefoldin complex | IEP | Enrichment |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Enrichment |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| BP | GO:0036211 | protein modification process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0050657 | nucleic acid transport | IEP | Enrichment |
| BP | GO:0050658 | RNA transport | IEP | Enrichment |
| BP | GO:0051028 | mRNA transport | IEP | Enrichment |
| BP | GO:0051168 | nuclear export | IEP | Enrichment |
| BP | GO:0051169 | nuclear transport | IEP | Enrichment |
| BP | GO:0051236 | establishment of RNA localization | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 34 | 105 |
| No external refs found! |