Cre10.g445650 (30790176, SMC3)

Aliases : 30790176, SMC3

Description : Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC3/TTN7 component

Gene families : OG_01_0001808 (OrthoFinder) Phylogenetic Tree(s): OG0001808_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre10.g445650
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000711.46	tig00000711_g3409.t1	Structural maintenance of chromosomes protein 3...	0.06	OrthoFinder
Cz13g08100.t1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.05	OrthoFinder
Dusal.0573s00002.1	33189042	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.04	OrthoFinder
EOD06899	No alias	Hypothetical protein [Ensembl].	0.04	OrthoFinder
EOD23679	No alias	Putative subunit of cohesin complex [Ensembl].	0.02	OrthoFinder
OT_09G02100.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.06	OrthoFinder
PTI_24G00330.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.03	OrthoFinder
Sro546_g163990.1	Contig4069.g31176	Of chromosomes protein 3	0.03	OrthoFinder
Transcript_contig_54820	54820	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.03	OrthoFinder
Vocar.0026s0057.1	32892426	SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan].	0.02	OrthoFinder
XM_002508766.1	MICPUN_85842, 85842	Condensin complex component	0.04	OrthoFinder
XM_003056761.1	MicpuC2_25650, 25650	Condensin complex component	0.02	OrthoFinder
lcl\|BLLF01000127.1_cds_GFH07947.1_2424	HaLaN_02832, GFH07947	SMC hinge domain-containing protein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Enrichment
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Enrichment
BP	GO:0000723	telomere maintenance	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003774	motor activity	IEP	Enrichment
MF	GO:0003777	microtubule motor activity	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
CC	GO:0005856	cytoskeleton	IEP	Enrichment
CC	GO:0005885	Arp2/3 protein complex	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006302	double-strand break repair	IEP	Enrichment
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
BP	GO:0007015	actin filament organization	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
BP	GO:0008150	biological_process	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
BP	GO:0010564	regulation of cell cycle process	IEP	Enrichment
BP	GO:0010638	positive regulation of organelle organization	IEP	Enrichment
BP	GO:0010948	negative regulation of cell cycle process	IEP	Enrichment
CC	GO:0015629	actin cytoskeleton	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0030832	regulation of actin filament length	IEP	Enrichment
BP	GO:0030833	regulation of actin filament polymerization	IEP	Enrichment
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Enrichment
BP	GO:0031334	positive regulation of protein-containing complex assembly	IEP	Enrichment
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0032271	regulation of protein polymerization	IEP	Enrichment
BP	GO:0032273	positive regulation of protein polymerization	IEP	Enrichment
BP	GO:0032535	regulation of cellular component size	IEP	Enrichment
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Enrichment
BP	GO:0032970	regulation of actin filament-based process	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	Enrichment
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Enrichment
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Enrichment
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
BP	GO:0045010	actin nucleation	IEP	Enrichment
BP	GO:0045786	negative regulation of cell cycle	IEP	Enrichment
BP	GO:0048518	positive regulation of biological process	IEP	Enrichment
BP	GO:0048519	negative regulation of biological process	IEP	Enrichment
BP	GO:0048522	positive regulation of cellular process	IEP	Enrichment
BP	GO:0048523	negative regulation of cellular process	IEP	Enrichment
BP	GO:0050789	regulation of biological process	IEP	Enrichment
BP	GO:0050794	regulation of cellular process	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051130	positive regulation of cellular component organization	IEP	Enrichment
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Enrichment
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
BP	GO:0051726	regulation of cell cycle	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment
BP	GO:0065007	biological regulation	IEP	Enrichment
BP	GO:0065008	regulation of biological quality	IEP	Enrichment
MF	GO:0070403	NAD+ binding	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
BP	GO:0090066	regulation of anatomical structure size	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
BP	GO:0097435	supramolecular fiber organization	IEP	Enrichment
BP	GO:0110053	regulation of actin filament organization	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Enrichment
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Enrichment
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Enrichment
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	2	1186
IPR010935	SMC_hinge	523	637

External Links

No external refs found!

Cre10.g445650 (30790176, SMC3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation