Cre10.g442850 (30790624)

Aliases : 30790624

Description : Cell cycle.organelle machineries.DNA replication.type-Ia DNA topoisomerase

Gene families : OG_01_0003092 (OrthoFinder) Phylogenetic Tree(s): OG0003092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre10.g442850
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
OT_06G02240.1	No alias	DNA topoisomerase, type IA, central; High mobility group...	0.02	OrthoFinder
Sro843_g209820.1	Contig42.g293	DNA topoisomerase 1	0.02	OrthoFinder
XM_002503013.1	MICPUN_59701, 59701	DNA topoisomerase I	0.02	OrthoFinder
XM_003058644.1	MicpuC2_57713, 57713	DNA topoisomerase	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
BP	GO:0001522	pseudouridine synthesis	IEP	Enrichment
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0005542	folic acid binding	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008649	rRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
MF	GO:0015298	solute:cation antiporter activity	IEP	Enrichment
MF	GO:0015299	solute:proton antiporter activity	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
BP	GO:0031167	rRNA methylation	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
MF	GO:0031406	carboxylic acid binding	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
MF	GO:0033218	amide binding	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Enrichment
MF	GO:0043177	organic acid binding	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0070475	rRNA base methylation	IEP	Enrichment
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Enrichment
MF	GO:0072341	modified amino acid binding	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013497	Topo_IA_cen	286	761
IPR006171	TOPRIM_domain	117	270
IPR013498	Topo_IA_Znf	871	907
IPR009071	HMG_box_dom	1304	1350
IPR025589	Toprim_C_rpt	1069	1121
IPR025589	Toprim_C_rpt	944	1067

External Links

No external refs found!

Cre10.g442850 (30790624)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation