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  5. Cre10.g442650

Cre10.g442650 (30790906)


Aliases : 30790906

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana


Gene families : OG_01_0000385 (OrthoFinder) Phylogenetic Tree(s): OG0000385_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g442650
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000852.43 tig00000852_g5052.t1 No description available 0.02 OrthoFinder
Vocar.0001s1220.1 32884304 R3H domain; DNA2/NAM7 helicase, AAA domain; DNA2/NAM7... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495247.1_1245 KAA8495247 DNA-binding protein SMUBP-2 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001374 R3H_dom 26 63
IPR041679 DNA2/NAM7-like_C 551 793
IPR041677 DNA2/NAM7_AAA_11 324 542
No external refs found!