Cre09.g415950 (30781212, PRPL6)

Aliases : 30781212, PRPL6

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL6 component

Gene families : OG_01_0002270 (OrthoFinder) Phylogenetic Tree(s): OG0002270_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g415950
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
Cz10g03060.t1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.18	OrthoFinder
Dusal.0148s00001.1	33200410	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.08	OrthoFinder
EOD12393	No alias	50S ribosomal protein L6 [Ensembl].	0.02	OrthoFinder
EOD39267	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.02	OrthoFinder
OT_15G02320.1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.12	OrthoFinder
Sro51_chlor_g029620.1	Rpl6	Rpl6	0.1	OrthoFinder
Sro884_mit_g215700.1	Rpl6	Rpl6	0.09	OrthoFinder
TPCG02600.1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.09	OrthoFinder
Vocar.0011s0204.1	32895344	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.17	OrthoFinder
XM_002505251.1	MICPUN_92039, 92039	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.2	OrthoFinder
XM_003060275.1	MicpuC2_45705, 45705	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.09	OrthoFinder
lcl\|BLLF01001465.1_cds_GFH19448.1_13925	HaLaN_16394, GFH19448	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.13	OrthoFinder
lcl\|LHPG02000015.1_cds_PRW34061.1_2806	PRW34061	50S ribosomal chloroplastic	0.14	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Enrichment
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Enrichment
MF	GO:0003746	translation elongation factor activity	IEP	Enrichment
MF	GO:0003747	translation release factor activity	IEP	Enrichment
BP	GO:0006066	alcohol metabolic process	IEP	Enrichment
BP	GO:0006414	translational elongation	IEP	Enrichment
BP	GO:0006457	protein folding	IEP	Enrichment
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	Enrichment
MF	GO:0008079	translation termination factor activity	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
BP	GO:0019751	polyol metabolic process	IEP	Enrichment
MF	GO:0030234	enzyme regulator activity	IEP	Enrichment
BP	GO:0034311	diol metabolic process	IEP	Enrichment
BP	GO:0034312	diol biosynthetic process	IEP	Enrichment
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Enrichment
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0042802	identical protein binding	IEP	Enrichment
MF	GO:0042803	protein homodimerization activity	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	Enrichment
BP	GO:0046165	alcohol biosynthetic process	IEP	Enrichment
BP	GO:0046173	polyol biosynthetic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Enrichment
MF	GO:0060590	ATPase regulator activity	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
MF	GO:0098772	molecular function regulator	IEP	Enrichment
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Enrichment
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	36	107
IPR020040	Ribosomal_L6_a/b-dom	115	189

External Links

No external refs found!

Cre09.g415950 (30781212, PRPL6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation