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  5. Cre09.g407200

Cre09.g407200 (30780595)


Aliases : 30780595

Description : Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum


Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g407200
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001095.9 tig00001095_g7025.t1 Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 No description available 0.05 OrthoFinder
Cpa|evm.model.tig00020723.8 tig00020723_g13427.t1 No description available 0.04 OrthoFinder
Cz14g22040.t1 No alias Amine oxidase [Interproscan]. 0.19 OrthoFinder
Dusal.0111s00019.1 33199801 Amine oxidase [Interproscan]. 0.02 OrthoFinder
EOD16224 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
EOD31741 No alias Phytoene desaturase [Ensembl]. 0.03 OrthoFinder
EOD40572 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
PTI_07G01440.1 No alias Amine oxidase [Interproscan]. 0.03 OrthoFinder
Sro1649_g288630.1 Contig3529.g27273 Prolycopene isomerase, chloroplastic 0.03 OrthoFinder
Sro570_g168610.1 Contig131.g1484 Prolycopene isomerase, chloroplastic 0.04 OrthoFinder
TP03G05800.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
Transcript_contig_78738 78738 Hypothetical protein 0.06 OrthoFinder
Vocar.0008s0040.1 32897243 NAD(P)-binding Rossmann-like domain [Interproscan]. 0.06 OrthoFinder
XM_002507271.1 MICPUN_55458, 55458 Amine oxidase [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000127.1_cds_GFH07954.1_2431 HaLaN_02839, GFH07954 Prolycopene isomerase, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000280.1_cds_GFH10007.1_4484 HaLaN_05249, GFH10007 Prolycopene isomerase, chloroplastic 0.05 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33144.1_3623 PRW33144 Carotene isomerase 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497842.1_6795 KAA8497842 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!