Cre09.g392950 (30781024)

Aliases : 30781024

No description available

Gene families : OG_01_0000900 (OrthoFinder) Phylogenetic Tree(s): OG0000900_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g392950
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
Sro586_g171130.1	Contig1474.g13500	SpoU rRNA Methylase family	0.02	OrthoFinder
Vocar.0009s0268.1	32893331	tRNA/rRNA methyltransferase, SpoU type [Interproscan].	0.04	OrthoFinder
Vocar.0040s0060.1	32886256	tRNA/rRNA methyltransferase, SpoU type [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	Enrichment
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
MF	GO:0016597	amino acid binding	IEP	Enrichment
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0043177	organic acid binding	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
CC	GO:1905354	exoribonuclease complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001537	SpoU_MeTrfase	39	196

External Links

No external refs found!