1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre09.g391949

Cre09.g391949 (30781196)


Aliases : 30781196

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor complex.large subunit


Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g391949
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021464.4 tig00021464_g21711.t1 No description available 0.03 OrthoFinder
Cz03g21120.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz04g00020.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Dusal.0173s00022.1 33191835 Hypothetical protein 0.02 OrthoFinder
EOD21349 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD34357 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
OT_03G00400.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
PTI_05G02080.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Sro4_g003060.1 Contig3815.g29224 Splicing factor U2af large subunit 0.02 OrthoFinder
Sro760_g198350.1 Contig3371.g26396 U2AF 65 kDa subunit 0.03 OrthoFinder
Transcript_contig_55128 55128 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_55294 55294 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56236 56236 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
UNPLg00511.t1 No alias Hypothetical protein 0.04 OrthoFinder
Vocar.0012s0273.1 32895004 RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
Vocar.0044s0038.1 32896597 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_002500423.1 MICPUN_56849, 56849 RNA binding protein 0.03 OrthoFinder
XM_002506777.1 MICPUN_89118, 89118 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_002508966.1 MICPUN_63159, 63159 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_003056228.1 MicpuC2_70844, 70844 RNA binding protein 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45747.1_1280 PRW45747 Chorismate lyase isoform B 0.04 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18386.1_5801 PRW18386 Splicing factor u2af 65 kda 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 313 382
IPR000504 RRM_dom 179 250
No external refs found!