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Aliases : 30781417
Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre09.g390000 | |
| Cluster | HCCA: Cluster_137 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000128.11 | tig00000128_g7211.t1 | ISWI chromatin-remodeling complex ATPase CHR17... | 0.01 | OrthoFinder | |
| Cpa|evm.model.tig00000350.9 | tig00000350_g24309.t1 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder | |
| Cpa|evm.model.tig00000983.26 | tig00000983_g5915.t1 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder | |
| Cpa|evm.model.tig00020960.24 | tig00020960_g16545.t1 | Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cz04g03240.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| Cz04g34020.t1 | No alias | Helicase, C-terminal; Chromo domain; SNF2-related,... | 0.02 | OrthoFinder | |
| Cz16g07210.t1 | No alias | Hypothetical protein | 0.02 | OrthoFinder | |
| Cz16g07220.t1 | No alias | Helicase, C-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| Cz16g07230.t1 | No alias | SNF2-related, N-terminal domain [Interproscan]. | 0.03 | OrthoFinder | |
| Dusal.0024s00040.1 | 33202173 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0035s00025.1 | 33196663 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0357s00004.1 | 33189829 | SNF2-related, N-terminal domain; Helicase, C-terminal;... | 0.03 | OrthoFinder | |
| EOD05386 | No alias | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.02 | OrthoFinder | |
| EOD17057 | No alias | Chromodomain helicase DNA binding protein [Ensembl]. | 0.02 | OrthoFinder | |
| EOD23118 | No alias | SNF2-related, N-terminal domain [Interproscan]. | 0.01 | OrthoFinder | |
| EOD27679 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| EOD28310 | No alias | Chromodomain helicase DNA binding protein [Ensembl]. | 0.02 | OrthoFinder | |
| EOD31071 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| EOD37625 | No alias | Helicase, C-terminal; Zinc finger, PHD-finger;... | 0.02 | OrthoFinder | |
| EOD39269 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| EOD41894 | No alias | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| EOD41956 | No alias | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.03 | OrthoFinder | |
| OT_01G05670.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.06 | OrthoFinder | |
| OT_05G01620.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| OT_06G03660.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
| OT_12G02840.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
| OT_17G01920.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| PTI_01G08190.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| PTI_04G04910.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| PTI_05G01880.1 | No alias | High mobility group box domain; Helicase, C-terminal;... | 0.05 | OrthoFinder | |
| PTI_10G00070.1 | No alias | Helicase, C-terminal; High mobility group box domain;... | 0.02 | OrthoFinder | |
| PTI_10G02350.1 | No alias | Chromo domain; SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_12G00850.1 | No alias | Helicase, C-terminal; High mobility group box domain;... | 0.02 | OrthoFinder | |
| PTI_12G03630.1 | No alias | SLIDE domain; Helicase, C-terminal; SNF2-related,... | 0.02 | OrthoFinder | |
| Sro125_g060200.1 | Contig2833.g22731 | Chromodomain-helicase-DNA-binding protein | 0.03 | OrthoFinder | |
| Sro272_g104840.1 | Contig2144.g18025 | Chromodomain-helicase-DNA-binding protein | 0.02 | OrthoFinder | |
| Sro2_g001340.1 | Contig467.g6292 | CHD3-type chromatin-remodeling factor PICKLE | 0.02 | OrthoFinder | |
| Sro358_g125960.1 | Contig1210.g11383 | Probable chromatin-remodeling complex ATPase chain | 0.02 | OrthoFinder | |
| Sro566_g167850.1 | Contig3739.g28680 | ISWI chromatin-remodeling complex ATPase ISW2 | 0.02 | OrthoFinder | |
| Sro847_g210300.1 | Contig4605.g34375 | CHD3-type chromatin-remodeling factor | 0.02 | OrthoFinder | |
| TP11G02170.1 | No alias | SNF2-related, N-terminal domain; Chromo domain;... | 0.01 | OrthoFinder | |
| Vocar.0016s0256.1 | 32897896 | SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
| Vocar.0019s0100.1 | 32892722 | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.03 | OrthoFinder | |
| XM_002507782.1 | MICPUN_60518, 60518 | SNF2 super family | 0.03 | OrthoFinder | |
| XM_002508085.1 | MICPUN_60550, 60550 | SNF2 super family | 0.02 | OrthoFinder | |
| XM_003061151.1 | MicpuC2_60694, 60694 | SNF2 super family | 0.02 | OrthoFinder | |
| lcl|BLLF01000629.1_cds_GFH13582.1_8059 | HaLaN_09500, GFH13582 | Helicase, C-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01001410.1_cds_GFH19126.1_13603 | HaLaN_16027, GFH19126 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| lcl|LHPG02000001.1_cds_PRW61596.1_539 | PRW61596 | CHD3-type chromatin-remodeling factor PICKLE | 0.02 | OrthoFinder | |
| lcl|LHPG02000002.1_cds_PRW60614.1_4411 | PRW60614 | ATP-dependent helicase BRM | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003689 | DNA clamp loader activity | IEP | Enrichment |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| CC | GO:0005663 | DNA replication factor C complex | IEP | Enrichment |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| CC | GO:0005856 | cytoskeleton | IEP | Enrichment |
| CC | GO:0005885 | Arp2/3 protein complex | IEP | Enrichment |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Enrichment |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Enrichment |
| BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Enrichment |
| BP | GO:0006891 | intra-Golgi vesicle-mediated transport | IEP | Enrichment |
| BP | GO:0007015 | actin filament organization | IEP | Enrichment |
| BP | GO:0008064 | regulation of actin polymerization or depolymerization | IEP | Enrichment |
| BP | GO:0010638 | positive regulation of organelle organization | IEP | Enrichment |
| CC | GO:0015629 | actin cytoskeleton | IEP | Enrichment |
| BP | GO:0016567 | protein ubiquitination | IEP | Enrichment |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Enrichment |
| BP | GO:0019321 | pentose metabolic process | IEP | Enrichment |
| BP | GO:0019566 | arabinose metabolic process | IEP | Enrichment |
| BP | GO:0030832 | regulation of actin filament length | IEP | Enrichment |
| BP | GO:0030833 | regulation of actin filament polymerization | IEP | Enrichment |
| BP | GO:0030838 | positive regulation of actin filament polymerization | IEP | Enrichment |
| BP | GO:0031334 | positive regulation of protein-containing complex assembly | IEP | Enrichment |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| BP | GO:0032271 | regulation of protein polymerization | IEP | Enrichment |
| BP | GO:0032273 | positive regulation of protein polymerization | IEP | Enrichment |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Enrichment |
| BP | GO:0032535 | regulation of cellular component size | IEP | Enrichment |
| BP | GO:0032956 | regulation of actin cytoskeleton organization | IEP | Enrichment |
| BP | GO:0032970 | regulation of actin filament-based process | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| BP | GO:0033043 | regulation of organelle organization | IEP | Enrichment |
| BP | GO:0034314 | Arp2/3 complex-mediated actin nucleation | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043254 | regulation of protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0044087 | regulation of cellular component biogenesis | IEP | Enrichment |
| BP | GO:0044089 | positive regulation of cellular component biogenesis | IEP | Enrichment |
| BP | GO:0045010 | actin nucleation | IEP | Enrichment |
| BP | GO:0046373 | L-arabinose metabolic process | IEP | Enrichment |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Enrichment |
| BP | GO:0048518 | positive regulation of biological process | IEP | Enrichment |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Enrichment |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Enrichment |
| BP | GO:0051130 | positive regulation of cellular component organization | IEP | Enrichment |
| BP | GO:0051493 | regulation of cytoskeleton organization | IEP | Enrichment |
| BP | GO:0051495 | positive regulation of cytoskeleton organization | IEP | Enrichment |
| MF | GO:0070403 | NAD+ binding | IEP | Enrichment |
| BP | GO:0090066 | regulation of anatomical structure size | IEP | Enrichment |
| BP | GO:0097435 | supramolecular fiber organization | IEP | Enrichment |
| BP | GO:0110053 | regulation of actin filament organization | IEP | Enrichment |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Enrichment |
| CC | GO:1902494 | catalytic complex | IEP | Enrichment |
| BP | GO:1902903 | regulation of supramolecular fiber organization | IEP | Enrichment |
| BP | GO:1902905 | positive regulation of supramolecular fiber organization | IEP | Enrichment |
| CC | GO:1990234 | transferase complex | IEP | Enrichment |
| No external refs found! |