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  5. Cre09.g386350

Cre09.g386350 (30780863)


Aliases : 30780863

Description : Transcription elongation factor TFIIS OS=Arabidopsis thaliana


Gene families : OG_01_0000595 (OrthoFinder) Phylogenetic Tree(s): OG0000595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g386350
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cz02g16130.t1 No alias Transcription elongation factor S-II, central domain;... 0.02 OrthoFinder
OT_07G02750.1 No alias Transcription elongation factor S-II, central domain;... 0.03 OrthoFinder
Transcript_contig_176 176 Hypothetical protein 0.02 OrthoFinder
XM_003064678.1 MicpuC2_54753, 54753 Transcription elongation factor S-II, central domain;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR003618 TFIIS_cen_dom 169 289
IPR017923 TFIIS_N 36 84
IPR001222 Znf_TFIIS 308 346
No external refs found!