1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre08.g372800

Cre08.g372800 (30773886)


Aliases : 30773886

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B3 component


Gene families : OG_01_0001952 (OrthoFinder) Phylogenetic Tree(s): OG0001952_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre08.g372800
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001024.5 tig00001024_g6316.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.07 OrthoFinder
Cpa|evm.model.tig00001024.6 tig00001024_g6316.t1 Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz05g09290.t1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.07 OrthoFinder
Dusal.0114s00023.1 33202235 Mono-functional DNA-alkylating methyl methanesulfonate... 0.04 OrthoFinder
Dusal.2612s00001.1 33188975 Mono-functional DNA-alkylating methyl methanesulfonate... 0.03 OrthoFinder
EOD32065 No alias Cleavage/polyadenylation specificity factor, A subunit,... 0.07 OrthoFinder
OT_06G02080.1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.06 OrthoFinder
PTI_01G03690.1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.02 OrthoFinder
Sro105_g053150.1 Contig544.g7004 Spliceosome-associated protein 130 B 0.06 OrthoFinder
Transcript_contig_57590 57590 Cleavage/polyadenylation specificity factor, A subunit,... 0.02 OrthoFinder
Transcript_contig_78072 78072 Mono-functional DNA-alkylating methyl methanesulfonate... 0.02 OrthoFinder
Vocar.0065s0010.1 32886849 Cleavage/polyadenylation specificity factor, A subunit,... 0.05 OrthoFinder
XM_002508030.1 MICPUN_107017, 107017 Mono-functional DNA-alkylating methyl methanesulfonate... 0.05 OrthoFinder
XM_003062222.1 MicpuC2_29064, 29064 Mono-functional DNA-alkylating methyl methanesulfonate... 0.03 OrthoFinder
lcl|BLLF01000402.1_cds_GFH11425.1_5902 HaLaN_06918, GFH11425 Spliceosome-associated protein 130 B isoform C 0.02 OrthoFinder
lcl|BLLF01004833.1_cds_GFH30321.1_24798 HaLaN_29154, GFH30321 CPSF_A domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59037.1_7118 PRW59037 Splicing factor 3B subunit 3-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019902 phosphatase binding IEP Enrichment
MF GO:0019903 protein phosphatase binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 853 1181
No external refs found!