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  5. Cre07.g352251

Cre07.g352251 (30775310)


Aliases : 30775310

Description : ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g352251
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.111 tig00000113_g5693.t1 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00000796.23 tig00000796_g4246.t1 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder
Cpa|evm.model.tig00000842.2 tig00000842_g4821.t2 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cz01g23210.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
Cz04g05220.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz05g31260.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.14 OrthoFinder
EOD10970 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD22735 No alias Helicase-associated domain; DEAD/DEAH box helicase... 0.02 OrthoFinder
EOD31099 No alias Domain of unknown function DUF1605 [Interproscan]. 0.01 OrthoFinder
EOD31583 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
OT_01G03120.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.04 OrthoFinder
OT_05G03840.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.07 OrthoFinder
OT_16G00250.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_05G02970.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.06 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
PTI_08G03610.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
Sro4_g003320.1 Contig3815.g29250 Splicing factor ATP-dependent RNA helicase 0.06 OrthoFinder
Sro834_g208730.1 Contig2061.g17675 Splicing factor ATP-dependent RNA helicase 0.06 OrthoFinder
TP13G03460.1 No alias Domain of unknown function DUF1605; Helicase-associated... 0.03 OrthoFinder
Vocar.0005s0082.1 32884001 Domain of unknown function DUF1605; Helicase,... 0.03 OrthoFinder
Vocar.0015s0262.1 32898968 Helicase-associated domain; Domain of unknown function... 0.04 OrthoFinder
Vocar.0017s0041.1 32891358 Domain of unknown function DUF1605; Helicase,... 0.04 OrthoFinder
Vocar.0017s0208.1 32891523 Domain of unknown function DUF1605; DEAD/DEAH box... 0.03 OrthoFinder
Vocar.0037s0140.1 32897549 Helicase-associated domain; Domain of unknown function... 0.04 OrthoFinder
XM_002501417.1 MICPUN_58037, 58037 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_002502185.1 MICPUN_81845, 81845 Helicase, C-terminal; Helicase-associated domain; Domain... 0.1 OrthoFinder
XM_003058999.1 MicpuC2_33717, 33717 Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
XM_003059475.1 MicpuC2_18184, 18184 AAA+ ATPase domain; Helicase, C-terminal;... 0.06 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60688.1_4603 PRW60688 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496833.1_562 KAA8496833 Putative pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492270.1_5453 KAA8492270 Putative pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR011709 DUF1605 1269 1361
IPR001650 Helicase_C 752 839
IPR007502 Helicase-assoc_dom 903 1089
No external refs found!