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  5. Cre07.g351750

Cre07.g351750 (30774969)


Aliases : 30774969

Description : Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana


Gene families : OG_01_0003056 (OrthoFinder) Phylogenetic Tree(s): OG0003056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g351750
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000880.12 tig00000880_g5169.t1 Probable rRNA-processing protein EBP2 homolog... 0.05 OrthoFinder
Dusal.0125s00007.1 33191813 Eukaryotic rRNA processing [Interproscan]. 0.02 OrthoFinder
EOD13894 No alias Eukaryotic rRNA processing [Interproscan]. 0.04 OrthoFinder
OT_12G01740.1 No alias Eukaryotic rRNA processing [Interproscan]. 0.11 OrthoFinder
PTI_01G11480.1 No alias Eukaryotic rRNA processing [Interproscan]. 0.07 OrthoFinder
Sro229_g093170.1 Contig429.g5821 Processing protein EBP2 0.1 OrthoFinder
TP09G02570.1 No alias Eukaryotic rRNA processing [Interproscan]. 0.08 OrthoFinder
Transcript_contig_78547 78547 Eukaryotic rRNA processing [Interproscan]. 0.03 OrthoFinder
Vocar.0011s0046.1 32895459 Eukaryotic rRNA processing [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000472.1_cds_GFH12146.1_6623 HaLaN_07781, GFH12146 Eukaryotic rRNA processing [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01002840.1_cds_GFH25532.1_20009 HaLaN_23512, GFH25532 Hypothetical protein 0.08 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33635.1_3205 PRW33635 Putative rRNA-processing EBP2-like protein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497368.1_1097 KAA8497368 Putative rRNA-processing protein EBP2-like 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR008610 Ebp2 14 308
No external refs found!