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  5. Cre07.g345050

Cre07.g345050 (30775147)


Aliases : 30775147

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG_01_0000101 (OrthoFinder) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g345050
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cz07g32220.t1 No alias SBP domain [Interproscan]. 0.03 OrthoFinder
Vocar.0005s0367.1 32883600 SBP domain [Interproscan]. 0.02 OrthoFinder
Vocar.0022s0024.1 32891975 SBP domain [Interproscan]. 0.03 OrthoFinder
XM_003063328.1 MicpuC2_52944, 52944 SBP domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20503.1_5432 PRW20503 Squamosa promoter-binding 16 0.02 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05936.1_5959 PRW05936 Squamosa promoter binding 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR004333 SBP_dom 206 279
No external refs found!