- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : 30774611
Description : Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana
Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre07.g329150 | |
| Cluster | HCCA: Cluster_18 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000113.111 | tig00000113_g5693.t1 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
| Cz01g23210.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.03 | OrthoFinder | |
| Cz05g31260.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.05 | OrthoFinder | |
| Dusal.0084s00034.1 | 33201464 | Helicase, C-terminal; Helicase-associated domain;... | 0.02 | OrthoFinder | |
| EOD10970 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
| EOD22735 | No alias | Helicase-associated domain; DEAD/DEAH box helicase... | 0.02 | OrthoFinder | |
| OT_01G03120.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
| OT_05G03840.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.04 | OrthoFinder | |
| OT_11G02430.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
| PTI_05G02970.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
| PTI_08G03610.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.04 | OrthoFinder | |
| Sro4_g003320.1 | Contig3815.g29250 | Splicing factor ATP-dependent RNA helicase | 0.04 | OrthoFinder | |
| Sro834_g208730.1 | Contig2061.g17675 | Splicing factor ATP-dependent RNA helicase | 0.02 | OrthoFinder | |
| TP13G03460.1 | No alias | Domain of unknown function DUF1605; Helicase-associated... | 0.02 | OrthoFinder | |
| Vocar.0005s0082.1 | 32884001 | Domain of unknown function DUF1605; Helicase,... | 0.03 | OrthoFinder | |
| Vocar.0015s0262.1 | 32898968 | Helicase-associated domain; Domain of unknown function... | 0.03 | OrthoFinder | |
| XM_002502185.1 | MICPUN_81845, 81845 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.08 | OrthoFinder | |
| XM_002507667.1 | MICPUN_51830, 51830 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.03 | OrthoFinder | |
| XM_003058999.1 | MicpuC2_33717, 33717 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
| XM_003059475.1 | MicpuC2_18184, 18184 | AAA+ ATPase domain; Helicase, C-terminal;... | 0.03 | OrthoFinder | |
| lcl|LHPG02000018.1_cds_PRW32898.1_3654 | PRW32898 | ATP-dependent RNA helicase isoform X1 | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0004518 | nuclease activity | IEP | Enrichment |
| MF | GO:0004519 | endonuclease activity | IEP | Enrichment |
| MF | GO:0004521 | endoribonuclease activity | IEP | Enrichment |
| MF | GO:0004540 | ribonuclease activity | IEP | Enrichment |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Enrichment |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Enrichment |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008033 | tRNA processing | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
| BP | GO:0009451 | RNA modification | IEP | Enrichment |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Enrichment |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Enrichment |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Enrichment |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Enrichment |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
| BP | GO:0030488 | tRNA methylation | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| No external refs found! |