1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000057.119

Cpa|evm.model.tig00000057.119 (tig00000057_g144.t1)


Aliases : tig00000057_g144.t1

Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component


Gene families : OG_01_0002215 (OrthoFinder) Phylogenetic Tree(s): OG0002215_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000057.119
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cre04.g227350 30791049, CCR4 RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder
Dusal.0234s00021.1 33190802 NOT2/NOT3/NOT5, C-terminal; CCR4-Not complex component,... 0.02 OrthoFinder
EOD26433 No alias NOT2/NOT3/NOT5, C-terminal; CCR4-Not complex component,... 0.01 OrthoFinder
Sro174_g076810.1 Contig4298.g32465 CCR4-NOT transcription complex subunit 3 0.01 OrthoFinder
Transcript_contig_55096 55096 CCR4-Not complex component, Not N-terminal domain [Interproscan]. 0.03 OrthoFinder
Vocar.0001s1784.1 32885594 NOT2/NOT3/NOT5, C-terminal; CCR4-Not complex component,... 0.03 OrthoFinder
XM_003063184.1 MicpuC2_36328, 36328 CCR4-Not complex component, Not N-terminal domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001870.1_cds_GFH21633.1_16110 HaLaN_18981, GFH21633 CCR4-Not complex component, Not N-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58665.1_8000 PRW58665 CCR4-NOT transcription complex subunit 3 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007207 Not_N 4 122
No external refs found!