Aliases : 30780037, CBP20
No description available
Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cre06.g288750 | |
Cluster | HCCA: Cluster_70 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000402.16 | tig00000402_g193.t1 | RNA processing.RNA splicing.spliceosome-associated... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00000823.31 | tig00000823_g4557.t1 | RNA processing.RNA splicing.U12-type-intron-specific... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00020553.146 | tig00020553_g10637.t1 | Serine/arginine-rich splicing factor SR45a... | 0.04 | OrthoFinder | |
Cpa|evm.model.tig00021043.13 | tig00021043_g17622.t1 | No description available | 0.03 | OrthoFinder | |
Cpa|evm.model.tig00021433.15 | tig00021433_g21269.t1 | No description available | 0.07 | OrthoFinder | |
Cz05g06060.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.04 | OrthoFinder | |
Cz06g14010.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.04 | OrthoFinder | |
Cz07g27210.t1 | No alias | RNA recognition motif domain; Cleavage stimulation... | 0.02 | OrthoFinder | |
Cz08g24230.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
Cz14g08190.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
Cz17g16110.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
Dusal.0028s00033.1 | 33198481 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
Dusal.0322s00004.1 | 33197814 | RNA recognition motif domain [Interproscan]. | 0.01 | OrthoFinder | |
EOD23362 | No alias | RNA recognition motif domain [Interproscan]. | 0.01 | OrthoFinder | |
EOD31760 | No alias | RNA recognition motif domain [Interproscan]. | 0.01 | OrthoFinder | |
EOD42035 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
OT_04G03540.1 | No alias | RNA recognition motif domain; Zinc finger, CCCH-type... | 0.02 | OrthoFinder | |
OT_05G03560.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
PTI_06G03380.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
Sro12_g009400.1 | Contig2293.g18960 | Trans isomerase E | 0.01 | OrthoFinder | |
Sro1655_g289020.1 | Contig2908.g23148 | Stimulation factor subunit 2 tau variant | 0.02 | OrthoFinder | |
Vocar.0001s0026.1 | 32885509 | RNA recognition motif domain [Interproscan]. | 0.06 | OrthoFinder | |
XM_002504161.1 | MICPUN_76997, 76997 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
XM_003056785.1 | MicpuC2_9129, 9129 | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000347 | THO complex | IEP | Enrichment |
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Enrichment |
CC | GO:0000445 | THO complex part of transcription export complex | IEP | Enrichment |
MF | GO:0003674 | molecular_function | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003743 | translation initiation factor activity | IEP | Enrichment |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | Enrichment |
MF | GO:0005488 | binding | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
CC | GO:0005575 | cellular_component | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
CC | GO:0005667 | transcription regulator complex | IEP | Enrichment |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Enrichment |
BP | GO:0006265 | DNA topological change | IEP | Enrichment |
BP | GO:0006457 | protein folding | IEP | Enrichment |
BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
BP | GO:0006606 | protein import into nucleus | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | Enrichment |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
BP | GO:0008150 | biological_process | IEP | Enrichment |
BP | GO:0008380 | RNA splicing | IEP | Enrichment |
BP | GO:0009987 | cellular process | IEP | Enrichment |
CC | GO:0016272 | prefoldin complex | IEP | Enrichment |
BP | GO:0017038 | protein import | IEP | Enrichment |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Enrichment |
BP | GO:0018208 | peptidyl-proline modification | IEP | Enrichment |
CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
BP | GO:0033365 | protein localization to organelle | IEP | Enrichment |
BP | GO:0034504 | protein localization to nucleus | IEP | Enrichment |
BP | GO:0034613 | cellular protein localization | IEP | Enrichment |
BP | GO:0036211 | protein modification process | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
BP | GO:0051169 | nuclear transport | IEP | Enrichment |
BP | GO:0051170 | import into nucleus | IEP | Enrichment |
BP | GO:0051276 | chromosome organization | IEP | Enrichment |
BP | GO:0070727 | cellular macromolecule localization | IEP | Enrichment |
BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Enrichment |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Enrichment |
MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 19 | 89 |
No external refs found! |