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  5. Cpa|evm.model.tig00000391.2

Cpa|evm.model.tig00000391.2 (tig00000391_g24833.t1)


Aliases : tig00000391_g24833.t1

Description : DNA damage response.DNA repair mechanisms.photoreactivation.6-4-type photolyase (UVR3)


Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000391.2
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Cre01.g030650 30789664 Cryptochrome DASH, chloroplastic/mitochondrial... 0.02 OrthoFinder
Cre02.g078939 30785814 Cryptochrome DASH, chloroplastic/mitochondrial... 0.04 OrthoFinder
Cz09g17160.t1 No alias DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.03 OrthoFinder
Dusal.0183s00016.1 33202617 Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. 0.02 OrthoFinder
Dusal.0345s00010.1 33198539 DNA photolyase, N-terminal [Interproscan]. 0.02 OrthoFinder
EOD04007 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.02 OrthoFinder
EOD11134 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.05 OrthoFinder
EOD15451 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.02 OrthoFinder
EOD19626 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.01 OrthoFinder
OT_05G00290.1 No alias DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.02 OrthoFinder
PTI_05G04390.1 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.04 OrthoFinder
PTI_08G03200.1 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.03 OrthoFinder
Sro147_g068020.1 Contig246.g3025 Cryptochrome DASH, chloroplastic/mitochondrial 0.01 OrthoFinder
Sro2726_g335660.1 Contig3579.g27670 Cryptochrome DASH 0.04 OrthoFinder
Sro580_g170080.1 Contig2039.g17523 Deoxyribodipyrimidine photo-lyase 0.04 OrthoFinder
Sro82_g043740.1 Contig4032.g30965 Cryptochrome-1 0.03 OrthoFinder
Transcript_contig_56266 56266 DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.03 OrthoFinder
Vocar.0002s0198.1 32890551 Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. 0.02 OrthoFinder
Vocar.0004s0450.1 32889785 DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.02 OrthoFinder
XM_002508739.1 MICPUN_61974, 61974 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.03 OrthoFinder
lcl|BLLF01001533.1_cds_GFH19868.1_14345 HaLaN_16893, GFH19868 Photolyase/cryptochrome alpha/beta domain-containing protein 0.03 OrthoFinder
lcl|BLLF01001533.1_cds_GFH19869.1_14346 HaLaN_16894, GFH19869 Photolyase/cryptochrome alpha/beta domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499513.1_8466 KAA8499513 Cryptochrome-2 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 4 114
IPR005101 Cryptochr/Photolyase_FAD-bd 220 408
No external refs found!