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  5. Cre06.g282600

Cre06.g282600 (30779817)


Aliases : 30779817

Description : DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana


Gene families : OG_01_0002068 (OrthoFinder) Phylogenetic Tree(s): OG0002068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g282600
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020684.38 tig00020684_g12886.t1 DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.02 OrthoFinder
Cz16g07080.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.06 OrthoFinder
Cz16g07090.t1 No alias Domain of unknown function DUF4217; Helicase, C-terminal... 0.03 OrthoFinder
Dusal.0120s00023.1 33194376 Domain of unknown function DUF4217; Helicase,... 0.02 OrthoFinder
EOD07713 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
OT_14G02060.1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
PTI_02G04280.1 No alias Helicase, C-terminal; Domain of unknown function... 0.11 OrthoFinder
Sro72_g040020.1 Contig1459.g13401 Dependent rRNA helicase 0.05 OrthoFinder
TP05G00180.1 No alias Domain of unknown function DUF4217; Helicase,... 0.04 OrthoFinder
Vocar.0002s0024.1 32890882 Domain of unknown function DUF4217; DEAD/DEAH box... 0.04 OrthoFinder
XM_002505445.1 MICPUN_67382, 67382 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.13 OrthoFinder
XM_003059722.1 MicpuC2_18446, 18446 Helicase, C-terminal; Domain of unknown function... 0.07 OrthoFinder
lcl|BLLF01001098.1_cds_GFH17109.1_11586 HaLaN_13669, GFH17109 RNA helicase 0.02 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20643.1_5283 PRW20643 DEAD-box ATP-dependent RNA helicase 18 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496903.1_632 KAA8496903 ATP-dependent RNA helicase DDX55 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 3 93
IPR001650 Helicase_C 198 313
IPR025313 DUF4217 435 492
No external refs found!