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  5. Cre06.g278222

Cre06.g278222 (30778664, RCK1)


Aliases : 30778664, RCK1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RACK1 associated component


Gene families : OG_01_0002731 (OrthoFinder) Phylogenetic Tree(s): OG0002731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g278222
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000169.6 tig00000169_g11878.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 OrthoFinder
Cz04g00190.t1 No alias WD40 repeat [Interproscan]. 0.16 OrthoFinder
Dusal.0241s00008.1 33190252 WD40 repeat [Interproscan]. 0.25 OrthoFinder
EOD05714 No alias Receptor of activated protein kinase C [Ensembl]. 0.09 OrthoFinder
EOD14372 No alias Receptor of activated protein kinase C [Ensembl]. 0.09 OrthoFinder
OT_13G01530.1 No alias WD40 repeat [Interproscan]. 0.19 OrthoFinder
PTI_13G02390.1 No alias WD40 repeat [Interproscan]. 0.23 OrthoFinder
Sro925_g220910.1 Contig3078.g24550 Nucleotide-binding protein subunit beta-like protein 0.25 OrthoFinder
TP01G03160.1 No alias WD40 repeat [Interproscan]. 0.13 OrthoFinder
Vocar.0002s0308.1 32890609 WD40 repeat [Interproscan]. 0.19 OrthoFinder
XM_002502789.1 MICPUN_94482, 94482 WD40 repeat [Interproscan]. 0.15 OrthoFinder
XM_003060906.1 MicpuC2_28307, 28307 WD40 repeat [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20811.1_5083 PRW20811 Receptor of activated kinase C component of 40S small... 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499471.1_8424 KAA8499471 Guanine nucleotide-binding protein subunit beta-2-like 1 0.2 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004383 guanylate cyclase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006182 cGMP biosynthetic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046068 cGMP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
BP GO:0052652 cyclic purine nucleotide metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 59 92
IPR001680 WD40_repeat 9 44
IPR001680 WD40_repeat 236 262
IPR001680 WD40_repeat 289 312
IPR001680 WD40_repeat 98 134
IPR001680 WD40_repeat 189 222
IPR001680 WD40_repeat 143 180
No external refs found!