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  5. Cre06.g251350

Cre06.g251350 (30778804)


Aliases : 30778804

Description : Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana


Gene families : OG_01_0002219 (OrthoFinder) Phylogenetic Tree(s): OG0002219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g251350
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cz14g03150.t1 No alias WD40 repeat [Interproscan]. 0.07 OrthoFinder
Sro1924_g305740.1 Contig3525.g27254 WD repeat-containing protein 18 0.05 OrthoFinder
Transcript_contig_10595 10595 WD40 repeat [Interproscan]. 0.05 OrthoFinder
Vocar.0038s0024.1 32887671 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_002505320.1 MICPUN_68726, 68726 WD40 repeat [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01001852.1_cds_GFH21551.1_16028 HaLaN_18880, GFH21551 WD40 repeat [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33905.1_2949 PRW33905 ROOT INITIATION DEFECTIVE 3 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 300 357
IPR001680 WD40_repeat 78 103
No external refs found!