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  5. Cre05.g241300

Cre05.g241300 (30783199)


Aliases : 30783199

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-F component


Gene families : OG_01_0001195 (OrthoFinder) Phylogenetic Tree(s): OG0001195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre05.g241300
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.19 tig00000944_g5941.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.07 OrthoFinder
Cpa|evm.model.tig00001355.5 tig00001355_g8343.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.07 OrthoFinder
Cz06g33050.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Cz16g08090.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.05 OrthoFinder
EOD10326 No alias Hypothetical protein [Ensembl]. 0.05 OrthoFinder
EOD35083 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
PTI_08G00280.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro2563_g331380.1 Contig869.g9421 Sm-like protein LSm6 0.04 OrthoFinder
Vocar.0003s0369.1 32889312 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.11 OrthoFinder
Vocar.0019s0166.1 32892861 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.06 OrthoFinder
XM_002502692.1 MICPUN_59039, 59039 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder
XM_003060799.1 MicpuC2_19555, 19555 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01002536.1_cds_GFH24433.1_18910 HaLaN_22229, GFH24433 U6 small ribonucleoprotein F 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098799 outer mitochondrial membrane protein complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 12 74
No external refs found!