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  5. Cre05.g235750

Cre05.g235750 (30783291, MSH6)


Aliases : 30783291, MSH6

Description : DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana


Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre05.g235750
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000489.16 tig00000489_g1375.t1 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cpa|evm.model.tig00021616.10 tig00021616_g22915.t1 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.07 OrthoFinder
Cz04g14260.t1 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.18 OrthoFinder
Dusal.0149s00005.1 33186635 DNA mismatch repair protein MutS, connector domain; DNA... 0.04 OrthoFinder
EOD22516 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD36720 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.12 OrthoFinder
OT_04G02070.1 No alias DNA mismatch repair protein MutS-like, N-terminal; DNA... 0.03 OrthoFinder
OT_06G02660.1 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.11 OrthoFinder
OT_15G03050.1 No alias UbiE/COQ5 methyltransferase; Protein of unknown function... 0.02 OrthoFinder
PTI_01G03680.1 No alias DNA mismatch repair protein MutS, core; DNA mismatch... 0.07 OrthoFinder
Sro1192_g251010.1 Contig331.g4397 Protein MutS 0.04 OrthoFinder
SymbC1.scaffold5277.3 5277.3 DNA mismatch repair protein MutS-like, N-terminal [Interproscan]. 0.02 OrthoFinder
Vocar.0003s0463.1 32889088 DNA mismatch repair protein MutS, C-terminal; DNA... 0.13 OrthoFinder
XM_003059453.1 MicpuC2_40215, 40215 DNA mismatch repair protein MutS, core; DNA mismatch... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0004376 glycolipid mannosyltransferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006497 protein lipidation IEP Enrichment
BP GO:0006505 GPI anchor metabolic process IEP Enrichment
BP GO:0006506 GPI anchor biosynthetic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045017 glycerolipid biosynthetic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046474 glycerophospholipid biosynthetic process IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 441 556
IPR007696 DNA_mismatch_repair_MutS_core 856 990
IPR000432 DNA_mismatch_repair_MutS_C 1002 1196
IPR007860 DNA_mmatch_repair_MutS_con_dom 599 651
No external refs found!