1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre04.g229948

Cre04.g229948 (30791118)


Aliases : 30791118

Description : RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase


Gene families : OG_01_0001054 (OrthoFinder) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g229948
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cz12g22180.t1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.03 OrthoFinder
Cz13g01280.t1 No alias tRNA-dihydrouridine synthase; Zinc finger, CCCH-type... 0.02 OrthoFinder
EOD04070 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder
EOD38961 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder
OT_10G01720.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.16 OrthoFinder
PTI_12G00560.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder
Sro767_g199550.1 Contig2377.g19543 Synthase 0.05 OrthoFinder
TP03G09810.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder
Transcript_contig_57299 57299 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1778.1 32885246 E3 ligase, CCCH-type zinc finger; tRNA-dihydrouridine... 0.04 OrthoFinder
Vocar.0017s0070.1 32891389 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
XM_002500922.1 MICPUN_99494, 99494 tRNA-dihydrouridine synthase; E3 ligase, CCCH-type zinc... 0.02 OrthoFinder
XM_002502940.1 MICPUN_66278, 66278 tRNA-dihydrouridine synthase [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01002284.1_cds_GFH23483.1_17960 HaLaN_21100, GFH23483 TRNA-dihydrouridine synthase 3 0.01 OrthoFinder
lcl|BLLF01005284.1_cds_GFH31005.1_25482 HaLaN_29949, GFH31005 TRNA-dihydrouridine synthase 3 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 436 685
IPR000571 Znf_CCCH 81 102
No external refs found!