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  5. Cre04.g219750

Cre04.g219750 (30791451)


Aliases : 30791451

Description : Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.RecQ4A helicase component


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g219750
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.28 tig00020961_g16648.t1 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz01g28020.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.05 OrthoFinder
Cz02g03170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
Cz02g33110.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.03 OrthoFinder
Dusal.0020s00028.1 33193689 Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.03 OrthoFinder
EOD12459 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
EOD36303 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_03G01700.1 No alias Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.06 OrthoFinder
OT_04G00490.1 No alias DEAD/DEAH box helicase domain; HRDC domain; Helicase,... 0.04 OrthoFinder
OT_05G04280.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Sro108_g054090.1 Contig2294.g18989 Syndrome ATP-dependent helicase homolog 0.01 OrthoFinder
Sro408_g136820.1 Contig3193.g25217 Probable Werner syndrome ATP-dependent helicase homolog 1 0.03 OrthoFinder
Sro83_g044440.1 Contig4450.g33418 Syndrome ATP-dependent helicase homolog 0.01 OrthoFinder
Sro9_g007280.1 Contig4120.g31496 Probable Werner syndrome ATP-dependent helicase homolog 1 0.03 OrthoFinder
TP03G09760.1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.02 OrthoFinder
Vocar.0048s0026.1 32893654 Zinc finger, CCHC-type; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
XM_002502498.1 MICPUN_50295, 50295 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
XM_003055181.1 MicpuC2_12297, 12297 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.02 OrthoFinder
XM_003056852.1 MicpuC2_636, 636 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003062439.1 MicpuC2_29315, 29315 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.02 OrthoFinder
XM_003062797.1 MicpuC2_52663, 52663 ATP-dependent DNA helicase 0.03 OrthoFinder
lcl|BLLF01003204.1_cds_GFH26680.1_21157 HaLaN_24867, GFH26680 ATP-dependent DNA helicase 0.01 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18345.1_5823 PRW18345 Putative ATP-dependent DNA helicase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 475 642
IPR032284 RecQ_Zn-bd 810 880
IPR018982 RQC_domain 890 1004
IPR001650 Helicase_C 695 798
No external refs found!