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  5. Cre04.g218900

Cre04.g218900 (30791160)


Aliases : 30791160

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana


Gene families : OG_01_0000139 (OrthoFinder) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g218900

Target Alias Description ECC score Gene Family Method Actions
Sro1015_g231570.1 Contig1632.g14694 ESX-1 secretion system protein EccA1 0.01 OrthoFinder
Sro1015_g231580.1 Contig1632.g14695 ESX-3 secretion system protein EccA3 0.02 OrthoFinder
Sro1497_g277570.1 Contig4331.g32651 NFX1-type zinc finger-containing protein 1 0.02 OrthoFinder
lcl|BLLF01001831.1_cds_GFH21450.1_15927 HaLaN_18757, GFH21450 DNA2/NAM7 helicase, AAA domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 581 979
IPR003959 ATPase_AAA_core 2128 2247
IPR003959 ATPase_AAA_core 1851 1952
IPR003959 ATPase_AAA_core 2397 2528
IPR041679 DNA2/NAM7-like_C 995 1238
IPR041627 AAA_lid_6 2291 2332
IPR041627 AAA_lid_6 2017 2052
No external refs found!