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  5. Cre03.g197000

Cre03.g197000 (30787867)


Aliases : 30787867

Description : Ribosome production factor 2 homolog OS=Arabidopsis thaliana


Gene families : OG_01_0002998 (OrthoFinder) Phylogenetic Tree(s): OG0002998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g197000
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.36 tig00001003_g6291.t1 Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz01g37260.t1 No alias Brix domain [Interproscan]. 0.1 OrthoFinder
Dusal.0095s00009.1 33190289 Brix domain [Interproscan]. 0.03 OrthoFinder
EOD23498 No alias Brix domain [Interproscan]. 0.01 OrthoFinder
EOD30893 No alias Brix domain [Interproscan]. 0.04 OrthoFinder
OT_17G01690.1 No alias Brix domain [Interproscan]. 0.14 OrthoFinder
PTI_06G01690.1 No alias Brix domain [Interproscan]. 0.11 OrthoFinder
Sro545_g163870.1 Contig1180.g11230 Production factor 2 homolog 0.1 OrthoFinder
TP03G03260.1 No alias Brix domain [Interproscan]. 0.12 OrthoFinder
Transcript_contig_82014 82014 Brix domain [Interproscan]. 0.02 OrthoFinder
Vocar.0011s0309.1 32895454 Brix domain [Interproscan]. 0.06 OrthoFinder
XM_002506064.1 MICPUN_70830, 70830 Brix domain [Interproscan]. 0.11 OrthoFinder
XM_003056730.1 MicpuC2_5469, 5469 Brix domain [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01001273.1_cds_GFH18265.1_12742 HaLaN_15038, GFH18265 Brix domain-containing protein 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497175.1_904 KAA8497175 Ribosome production factor 2-like 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR007109 Brix 47 242
No external refs found!