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  5. Cre03.g171650

Cre03.g171650 (30786928)


Aliases : 30786928

Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g171650
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cz05g07080.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
EOD09487 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
EOD19502 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_02G05340.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain; RWD... 0.03 OrthoFinder
Sro152_g069390.1 Contig69.g699 Splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
Sro1790_g297740.1 Contig4724.g35072 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic 0.02 OrthoFinder
SymbC1.scaffold3430.2 3430.2 DEAD/DEAH box helicase domain; Domain of unknown... 0.03 OrthoFinder
XM_002502784.1 MICPUN_82674, 82674 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
XM_002505666.1 MICPUN_63531, 63531 Helicase, C-terminal; Helicase-associated domain;... 0.04 OrthoFinder
XM_002507013.1 MICPUN_77912, 77912 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_003054755.1 MicpuC2_45131, 45131 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003058268.1 MicpuC2_39554, 39554 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58696.1_7838 PRW58696 Helicase domain-containing 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 638 793
IPR007502 Helicase-assoc_dom 1101 1190
IPR001650 Helicase_C 903 1031
IPR011709 DUF1605 1329 1427
No external refs found!