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  5. Cre03.g170750

Cre03.g170750 (30786644, RNP3)


Aliases : 30786644, RNP3

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Imp3 assembly factor


Gene families : OG_01_0002993 (OrthoFinder) Phylogenetic Tree(s): OG0002993_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g170750
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020510.74 tig00020510_g9856.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cz01g11040.t1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.06 OrthoFinder
Dusal.0135s00002.1 33194042 Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.02 OrthoFinder
EOD15703 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.07 OrthoFinder
Sro1782_g297190.1 Contig2251.g18664 Nucleolar ribonucleoprotein protein IMP3 0.03 OrthoFinder
Sro2216_g319420.1 Contig4634.g34555 Nucleolar ribonucleoprotein protein IMP3 0.04 OrthoFinder
lcl|BLLF01000279.1_cds_GFH09985.1_4462 HaLaN_05221, GFH09985 S4 RNA-binding domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32864.1_3649 PRW32864 U3 small nucleolar ribonucleo IMP3 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 107 153
IPR001912 Ribosomal_S4/S9_N 4 63
No external refs found!