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  5. Cre03.g166650

Cre03.g166650 (30787330)


Aliases : 30787330

Description : DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica


Gene families : OG_01_0004045 (OrthoFinder) Phylogenetic Tree(s): OG0004045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g166650
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cz01g35040.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0484s00001.1 33186283 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
OT_16G02590.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
XM_003063481.1 MicpuC2_63953, 63953 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
lcl|BLLF01003304.1_cds_GFH26971.1_21448 HaLaN_25215, GFH26971 DEAD box RNA helicase CiRH22 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 445 543
IPR011545 DEAD/DEAH_box_helicase_dom 122 312
No external refs found!