Cre03.g165750 (30786879)

Aliases : 30786879

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 1

Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g165750
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000241.15	tig00000241_g20874.t1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder
Cpa\|evm.model.tig00022075.6	tig00022075_g23568.t1	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cz01g33020.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.06	OrthoFinder
Cz03g13040.t1	No alias	RNA polymerase II, heptapeptide repeat, eukaryotic; RNA...	0.02	OrthoFinder
Dusal.0157s00011.1	33200035	RNA polymerase Rpb1, domain 1; RNA polymerase, alpha...	0.03	OrthoFinder
EOD16843	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.03	OrthoFinder
EOD21342	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.01	OrthoFinder
OT_02G03580.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.06	OrthoFinder
OT_10G01340.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.02	OrthoFinder
PTI_12G01840.1	No alias	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
Sro544_g163690.1	Contig3214.g25423	DNA-directed RNA polymerase subunit beta' (Fragment)	0.02	OrthoFinder
XM_002501986.1	MICPUN_82079, 82079	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.03	OrthoFinder
XM_003057453.1	MicpuC2_46863, 46863	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58100.1_7994	PRW58100	DNA-directed RNA polymerase III largest subunit	0.05	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57000.1_9043	PRW57000	DNA-directed RNA polymerase II subunit 1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Enrichment
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003724	RNA helicase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004540	ribonuclease activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006813	potassium ion transport	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008649	rRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
BP	GO:0031167	rRNA methylation	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
MF	GO:0050661	NADP binding	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0070475	rRNA base methylation	IEP	Enrichment
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	28	363
IPR007066	RNA_pol_Rpb1_3	534	705
IPR007083	RNA_pol_Rpb1_4	730	836
IPR000722	RNA_pol_asu	365	529
IPR007081	RNA_pol_Rpb1_5	843	1420

External Links

No external refs found!

Cre03.g165750 (30786879)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation