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  5. Cre03.g161800

Cre03.g161800 (30788217)


Aliases : 30788217

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REA1 assembly factor (MDN1)


Gene families : OG_01_0000696 (OrthoFinder) Phylogenetic Tree(s): OG0000696_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g161800
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000403.82 tig00000403_g342.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder
Cz01g25050.t1 No alias Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.13 OrthoFinder
EOD04726 No alias Midasin AAA lid domain 5; ATPase, dynein-related, AAA... 0.02 OrthoFinder
EOD09279 No alias Midasin, AAA lid domain 7; Midasin AAA lid domain 5;... 0.08 OrthoFinder
PTI_00G02450.1 No alias Hypothetical protein 0.02 OrthoFinder
PTI_27G01500.1 No alias Midasin, AAA lid domain 7; Midasin AAA lid domain 5;... 0.02 OrthoFinder
Transcript_contig_28543 28543 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_29169 29169 ATPase, dynein-related, AAA domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_61650 61650 Hypothetical protein 0.03 OrthoFinder
Transcript_contig_65064 65064 Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.02 OrthoFinder
Transcript_contig_78617 78617 Hypothetical protein 0.06 OrthoFinder
Transcript_contig_9424 9424 Hypothetical protein 0.03 OrthoFinder
XM_002508113.1 MICPUN_76243, 76243 Hypothetical protein 0.02 OrthoFinder
XM_003061925.1 MicpuC2_21219, 21219 Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.02 OrthoFinder
XM_003061926.1 MicpuC2_70009, 70009 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01000887.1_cds_GFH15700.1_10177 HaLaN_11977, GFH15700 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39247.1_2461 PRW39247 Type A von Willebrand factor domain-containing 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR040848 AAA_lid_7 2258 2445
IPR040848 AAA_lid_7 633 740
IPR040848 AAA_lid_7 1466 1559
IPR041190 Midasin_AAA_lid_5 1143 1244
IPR011704 ATPase_dyneun-rel_AAA 2108 2246
IPR011704 ATPase_dyneun-rel_AAA 2718 2801
IPR011704 ATPase_dyneun-rel_AAA 1817 1903
IPR011704 ATPase_dyneun-rel_AAA 360 482
IPR011704 ATPase_dyneun-rel_AAA 1028 1130
IPR011704 ATPase_dyneun-rel_AAA 828 873
IPR011704 ATPase_dyneun-rel_AAA 1318 1454
IPR011704 ATPase_dyneun-rel_AAA 1642 1702
No external refs found!