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  5. Cre03.g158550

Cre03.g158550 (30787160)


Aliases : 30787160

Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g158550
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.188 tig00000144_g9184.t1 ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cpa|evm.model.tig00000691.35 tig00000691_g3188.t1 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz04g03240.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
Cz04g34020.t1 No alias Helicase, C-terminal; Chromo domain; SNF2-related,... 0.09 OrthoFinder
EOD27679 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.05 OrthoFinder
EOD31071 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.08 OrthoFinder
EOD39269 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
EOD41894 No alias SNF2-related, N-terminal domain [Interproscan]. 0.08 OrthoFinder
EOD41895 No alias Helicase, C-terminal [Interproscan]. 0.05 OrthoFinder
EOD41956 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.01 OrthoFinder
OT_01G05670.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.12 OrthoFinder
OT_06G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.06 OrthoFinder
OT_07G04400.1 No alias Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... 0.02 OrthoFinder
PTI_01G08190.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_04G04910.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_05G01880.1 No alias High mobility group box domain; Helicase, C-terminal;... 0.04 OrthoFinder
PTI_12G00850.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.01 OrthoFinder
PTI_12G03630.1 No alias SLIDE domain; Helicase, C-terminal; SNF2-related,... 0.03 OrthoFinder
PTI_24G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
Sro125_g060200.1 Contig2833.g22731 Chromodomain-helicase-DNA-binding protein 0.03 OrthoFinder
Sro1796_g298120.1 Contig441.g5925 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Sro264_g102660.1 Contig921.g9692 Probable chromatin-remodeling complex ATPase chain 0.03 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.02 OrthoFinder
Sro29_g019150.1 Contig1384.g12758 CHD3-type chromatin-remodeling factor CHR7 0.02 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.02 OrthoFinder
Sro358_g125960.1 Contig1210.g11383 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Sro566_g167850.1 Contig3739.g28680 ISWI chromatin-remodeling complex ATPase ISW2 0.03 OrthoFinder
Sro847_g210300.1 Contig4605.g34375 CHD3-type chromatin-remodeling factor 0.03 OrthoFinder
Transcript_contig_53936 53936 Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
Transcript_contig_55210 55210 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0019s0100.1 32892722 Chromo domain; Helicase, C-terminal; SNF2-related,... 0.09 OrthoFinder
XM_002503125.1 MICPUN_91017, 91017 SNF2 super family 0.04 OrthoFinder
XM_002506691.1 MICPUN_64845, 64845 SNF2 super family 0.02 OrthoFinder
XM_002507782.1 MICPUN_60518, 60518 SNF2 super family 0.1 OrthoFinder
XM_003061151.1 MicpuC2_60694, 60694 SNF2 super family 0.02 OrthoFinder
XM_003062178.1 MicpuC2_21039, 21039 SNF2 super family 0.03 OrthoFinder
XM_003062821.1 MicpuC2_52710, 52710 FY-rich, N-terminal; Helicase, C-terminal; FY-rich,... 0.05 OrthoFinder
lcl|BLLF01003474.1_cds_GFH27437.1_21914 HaLaN_25757, GFH27437 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003574.1_cds_GFH27683.1_22160 HaLaN_26047, GFH27683 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61596.1_539 PRW61596 CHD3-type chromatin-remodeling factor PICKLE 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60864.1_4118 PRW60864 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20842.1_5116 PRW20842 ATP-dependent DNA helicase DDM1 isoform X1 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 KAA8498955 SWI/SNF chromatin-remodeling complex subunit snf22 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499078.1_8031 KAA8499078 SWI/SNF chromatin-remodeling complex subunit snf22 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492942.1_2678 KAA8492942 TATA-binding protein-associated factor 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004376 glycolipid mannosyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006497 protein lipidation IEP Enrichment
BP GO:0006505 GPI anchor metabolic process IEP Enrichment
BP GO:0006506 GPI anchor biosynthetic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045017 glycerolipid biosynthetic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046474 glycerophospholipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 970 1086
IPR000330 SNF2_N 628 922
IPR023780 Chromo_domain 523 579
No external refs found!