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  5. Cpa|evm.model.tig00000378.15

Cpa|evm.model.tig00000378.15 (tig00000378_g24507.t1)


Aliases : tig00000378_g24507.t1

Description : Glutamate--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana


Gene families : OG_01_0001810 (OrthoFinder) Phylogenetic Tree(s): OG0001810_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000378.15
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Cre11.g467547 30775820 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder
Cz16g14040.t1 No alias Glutamyl/glutaminyl-tRNA synthetase, class Ib,... 0.03 OrthoFinder
EOD30704 No alias Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic... 0.02 OrthoFinder
Sro151_g069130.1 Contig294.g3839 Glutamine--tRNA ligase 0.01 OrthoFinder
TP13G01930.1 No alias Glutamyl/glutaminyl-tRNA synthetase, class Ib,... 0.02 OrthoFinder
Transcript_contig_56634 56634 Glutamyl/glutaminyl-tRNA synthetase, class Ib,... 0.01 OrthoFinder
Vocar.0014s0250.1 32888569 Glutamyl/glutaminyl-tRNA synthetase, class Ib,... 0.03 OrthoFinder
lcl|BLLF01000570.1_cds_GFH13059.1_7536 HaLaN_08864, GFH13059 Gln-glu non-discriminatory tRNA synthetase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR020059 Glu/Gln-tRNA-synth_Ib_codon-bd 17 163
No external refs found!