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  5. Cre03.g150350

Cre03.g150350 (30786728)


Aliases : 30786728

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana


Gene families : OG_01_0000282 (OrthoFinder) Phylogenetic Tree(s): OG0000282_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g150350
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cz06g22140.t1 No alias Domain of unknown function DUF5599; DNA2/NAM7 helicase,... 0.04 OrthoFinder
Cz14g12220.t1 No alias DNA2/NAM7 helicase, AAA domain; DNA2/NAM7 helicase-like,... 0.02 OrthoFinder
PTI_19G02480.1 No alias DNA2/NAM7 helicase, AAA domain; RNA helicase UPF1,... 0.02 OrthoFinder
Sro1794_g297930.1 Contig4702.g34971 Regulator of nonsense transcripts 1 0.01 OrthoFinder
Sro647_g180910.1 Contig3562.g27507 Polymerase alpha-associated DNA helicase A 0.02 OrthoFinder
Transcript_contig_567 567 DNA2/NAM7 helicase-like, AAA domain; DNA2/NAM7 helicase,... 0.02 OrthoFinder
Vocar.0019s0207.1 32892639 DNA2/NAM7 helicase, AAA domain; DNA2/NAM7 helicase-like,... 0.03 OrthoFinder
XM_002505947.1 MICPUN_65270, 65270 Domain of unknown function DUF5599; DNA2/NAM7... 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493028.1_2764 KAA8493028 Regulator of nonsense transcripts 1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005542 folic acid binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 992 1261
IPR041679 DNA2/NAM7-like_C 1270 1511
No external refs found!