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Aliases : 30788078, CGS1
Description : Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine gamma-synthase
Gene families : OG_01_0000297 (OrthoFinder) Phylogenetic Tree(s): OG0000297_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre03.g144627 | |
| Cluster | HCCA: Cluster_112 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00021350.37 | tig00021350_g20655.t1 | Amino acid metabolism.biosynthesis.aspartate... | 0.01 | OrthoFinder | |
| Transcript_contig_54869 | 54869 | Cys/Met metabolism, pyridoxal phosphate-dependent enzyme... | 0.02 | OrthoFinder | |
| Vocar.0014s0060.1 | 32888640 | Cys/Met metabolism, pyridoxal phosphate-dependent enzyme... | 0.08 | OrthoFinder | |
| XM_002505982.1 | MICPUN_98339, 98339 | Cys/Met metabolism, pyridoxal phosphate-dependent enzyme... | 0.06 | OrthoFinder | |
| XM_003057073.1 | MicpuC2_25455, 25455 | Cys/Met metabolism, pyridoxal phosphate-dependent enzyme... | 0.02 | OrthoFinder | |
| lcl|BLLF01000354.1_cds_GFH10864.1_5341 | HaLaN_06260, GFH10864 | Cystathionine gamma-synthase | 0.03 | OrthoFinder | |
| lcl|BLLF01001637.1_cds_GFH20450.1_14927 | HaLaN_17574, GFH20450 | Cystathionine gamma-synthase | 0.05 | OrthoFinder | |
| lcl|LHPG02000003.1_cds_PRW59614.1_6166 | PRW59614 | Cystathionine gamma-synthase | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499599.1_8552 | KAA8499599 | Cystathionine gamma-synthase 1, chloroplastic | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0019346 | transsulfuration | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0000287 | magnesium ion binding | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003743 | translation initiation factor activity | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003924 | GTPase activity | IEP | Enrichment |
| MF | GO:0004019 | adenylosuccinate synthase activity | IEP | Enrichment |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005737 | cytoplasm | IEP | Enrichment |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006413 | translational initiation | IEP | Enrichment |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
| BP | GO:0006432 | phenylalanyl-tRNA aminoacylation | IEP | Enrichment |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Enrichment |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Enrichment |
| MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Enrichment |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Enrichment |
| MF | GO:0016874 | ligase activity | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0043038 | amino acid activation | IEP | Enrichment |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000277 | Cys/Met-Metab_PyrdxlP-dep_enz | 79 | 463 |
| No external refs found! |